We derive a practical and worst-case speedup algorithm using the Four-Russians method for the O(n 6) time Rivas&Eddy Algorithm [2] describing the broadest set ...
The. Four-Russians speedup technique for non-pseudoknotted RNA secondary struc- ... The Fast R&E algorithm computes pseudoknotted RNA secondary structure in ...
While secondary pseudoknotted structure prediction is computationally challenging, such structures appear to play biologically important roles in both cells ...
Frid and Gusfield designed an O ( n 3 log n ) algorithm for RNA folding using the Four-Russians technique. In their algorithm the preprocessing is interleaved ...
Aug 5, 2016 · Recently three methodologies—Valiant, Four-Russians, and Sparsification—have been applied to speedup RNA secondary structure prediction.
We derive a practical and worst-case speedup algorithm using the Four-Russians method for the O(n 6) time Rivas&Eddy Algorithm [2] describing the broadest set ...
Speedup of RNA Pseudoknotted Secondary Structure Recurrence Computation with the Four-Russians Method. Yelena Frid, Dan Gusfield.
Aug 5, 2016 · In this paper, we explore three different algorithmic speedups. We first expand the reformulate the single sequence folding Four-Russians Θ n 3 ...
Recently three methodologies—Valiant, Four-Russians, and Sparsification—have been applied to speedup RNA secondary structure prediction. The sparsification ...
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2010, 1-12. Frid Y, Gusfield D: Speedup of RNA pseudoknotted secondary structure recurrence computation with the Four-Russians method. COCOA, vol. 7402 ...