May 27, 2011 · Affix arrays support bidirectional pattern search, which is required for efficiently handling the structural constraints of the pattern.
Structator: fast index-based search for RNA sequence-structure patterns
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May 27, 2011 · We present a novel method and readily applicable software for time efficient matching of RNA sequence-structure patterns in sequence databases.
This work deals with the program Structator — a fast index-based search tool for RNA sequence-structure patterns. We present two space efficient ...
Searching a subset of Rfam release 10.0 for RNA family CTV_rep_sig (Rfam Acc. RF00193) by building high-scoring global chains of matches. Files required
We present a novel method and readily applicable software for time efficient matching of RNA sequence-structure patterns in sequence databases. Our approach is ...
Structator: fast index-based search for RNA sequence-structure patterns · Expressive Pattern Matching with Logol. · A novel approach to represent and compare RNA ...
May 1, 2021 · Structator 1.1 ... Structator is a complete and robust open-source software solution for index-based search of RNA sequence-structure patterns.
Space Efficient Modifications to Structator— A Fast Index-Based ...
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This work deals with the program Structator — a fast index- based search tool for RNA sequence-structure patterns. We present two space efficient ...
Supplemental material for the paper : Structator : fast index-based search for RNA sequence-structure patterns · Biology, Computer Science · 2011.
We present a novel method and readily applicable software for time efficient matching of RNA sequence-structure patterns in sequence databases. Our approach is ...