skip to main content
10.1145/3473258.3473281acmotherconferencesArticle/Chapter ViewAbstractPublication PagesicbbtConference Proceedingsconference-collections
research-article

Prognostic Potential of CCT5 in Hepatocellular Carcinoma

Published: 11 December 2021 Publication History

Abstract

Chaperonin containing TCP1 subunit 5)CCT5( is a member of the companion protein containing the TCP1 complex (CCT), also known as the TCP1 loop complex (TRiC). The expression of CCT5 is abnormal in many cancers, but the biological role of CCT5 in hepatocellular carcinoma (LIHC) remains to be determined. We analyzed the expression of CCT5 using multiple gene expression databases. The genes co-expressed with CCT5 were identified using linkedonomics. The correlation between CCT5 and tumor immune infiltrates was studied by using tumor immune estimation resource (TIMER). CCT5 was found to be up-regulated in tumor tissues in multiple LIHC queues. High CCT5 expression was associated with overall survival (OS), relapse-free survival (RFS), progression-free survival (PFS) and disease-specific survival (DSS). Functional network analysis indicated that CCT5 was correlated with rectome Gene Formation Sets of tubulin folding intermediates by CCT/TRIC, ribonuclei complex protein biogenesis, rectome Gene Hsp90 chaoperone cycle for steroid hormone receptors (SHR). Significantly, CCT5 expression was positively correlated with the infiltration levels of B cell, CD4+T and CD8+T cells, macrophages, neutrophil, and dendritic cell. The expression of CCT5 is closely related to multiple immune markers in hepatocellular carcinoma. These findings suggest that CCT5 is associated with the prognosis and immunologic invasion of LIHC, and provide a basis for further study of the immunoregulatory role of CCT5 in LIHC.

References

[1]
Bray F, Ferlay J, Soerjomataram I, Siegel RL, Torre LA, Jemal A. 2018.Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA: a cancer journal for clinicians.68(6):394-424. http://doi.org/10.3322/caac.21492
[2]
El-Serag HB, Kanwal F. 2014.Epidemiology of hepatocellular carcinoma in the United States: where are we? Where do we go? Hepatology.60(5):1767-1775. http://doi.org/10.1002/hep.27222
[3]
Anwanwan D, Singh SK, Singh S, Saikam V, Singh R. 2020.Challenges in liver cancer and possible treatment approaches. Biochim Biophys Acta Rev Cancer.1873(1):188314-188314. http://doi.org/10.1016/j.bbcan.2019.188314
[4]
Lohitesh K, Chowdhury R, Mukherjee S. 2018.Resistance a major hindrance to chemotherapy in hepatocellular carcinoma: an insight. Cancer Cell Int.18:44-44. http://doi.org/10.1186/s12935-018-0538-7
[5]
Kubota H. 2002.Function and regulation of cytosolic molecular chaperone CCT. Vitamins and hormones.65:313-31. http://doi.org/10.1016/s0083-6729(02)65069-1
[6]
Bourke GJ, El Alami W, Wilson SJ, Yuan A, Roobol A, Carden MJ. 2002.Slow axonal transport of the cytosolic chaperonin CCT with Hsc73 and actin in motor neurons. Journal of neuroscience research.68(1):29-35. http://doi.org/10.1002/jnr.10186
[7]
Fares MA, Wolfe KH. 2003.Positive selection and subfunctionalization of duplicated CCT chaperonin subunits. Molecular biology and evolution.20(10):1588-97. http://doi.org/10.1093/molbev/msg160
[8]
Gao H, Zheng M, Sun S, Wang H, Yue Z, Zhu Y, 2017.Chaperonin containing TCP1 subunit 5 is a tumor associated antigen of non-small cell lung cancer. Oncotarget.8(38):64170-64179. http://doi.org/10.18632/oncotarget.19369
[9]
Engqvist H, Parris TZ, Kov�cs A, R�nnerman EW, Sundfeldt K, Karlsson P, 2020.Validation of Novel Prognostic Biomarkers for Early-Stage Clear-Cell, Endometrioid and Mucinous Ovarian Carcinomas Using Immunohistochemistry. Front Oncol.10:162-162. http://doi.org/10.3389/fonc.2020.00162
[10]
Hallal S, Russell BP, Wei H, Lee MYT, Toon CW, Sy J, 2019.Extracellular Vesicles from Neurosurgical Aspirates Identifies Chaperonin Containing TCP1 Subunit 6A as a Potential Glioblastoma Biomarker with Prognostic Significance. Proteomics.19(1-2):e1800157. http://doi.org/10.1002/pmic.201800157
[11]
Lian Q, Wang S, Zhang G, Wang D, Luo G, Tang J, 2018.HCCDB: A Database of Hepatocellular Carcinoma Expression Atlas. Genomics, proteomics & bioinformatics.16(4):269-275. http://doi.org/10.1016/j.gpb.2018.07.003
[12]
Chandrashekar DS, Bashel B, Balasubramanya SAH, Creighton CJ, Ponce-Rodriguez I, Chakravarthi B, 2017.UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses. Neoplasia (New York, NY).19(8):649-658. http://doi.org/10.1016/j.neo.2017.05.002
[13]
Thul PJ, Lindskog C. 2018.The human protein atlas: A spatial map of the human proteome. Protein science : a publication of the Protein Society.27(1):233-244. http://doi.org/10.1002/pro.3307
[14]
Vasaikar SV, Straub P, Wang J, Zhang B. 2018.LinkedOmics: analyzing multi-omics data within and across 32 cancer types. Nucleic acids research.46(D1):D956-d963. http://doi.org/10.1093/nar/gkx1090
[15]
Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, 2017.The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic acids research.45(D1):D362-d368. http://doi.org/10.1093/nar/gkw937
[16]
Li T, Fan J, Wang B, Traugh N, Chen Q, Liu JS, 2017.TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells. Cancer research.77(21):e108-e110. http://doi.org/10.1158/0008-5472.can-17-0307
[17]
Ru B, Wong CN, Tong Y, Zhong JY, Zhong SSW, Wu WC, 2019.TISIDB: an integrated repository portal for tumor-immune system interactions. Bioinformatics (Oxford, England).35(20):4200-4202. http://doi.org/10.1093/bioinformatics/btz210
[18]
Wang X, He Y, Mackowiak B, Gao B. 2020.MicroRNAs as regulators, biomarkers and therapeutic targets in liver diseases. Gut. http://doi.org/10.1136/gutjnl-2020-322526
[19]
Sun Y, Liu WZ, Liu T, Feng X, Yang N, Zhou HF. 2015.Signaling pathway of MAPK/ERK in cell proliferation, differentiation, migration, senescence and apoptosis. Journal of receptor and signal transduction research.35(6):600-4. http://doi.org/10.3109/10799893.2015.1030412
[20]
Antona V, Scalia F, Giorgio E, Radio FC, Brusco A, Oliveri M, 2020.A Novel CCT5 Missense Variant Associated with Early Onset Motor Neuropathy. International journal of molecular sciences.21(20). http://doi.org/10.3390/ijms21207631
[21]
Ooe A, Kato K, Noguchi S. 2007.Possible involvement of CCT5, RGS3, and YKT6 genes up-regulated in p53-mutated tumors in resistance to docetaxel in human breast cancers. Breast cancer research and treatment.101(3):305-15. http://doi.org/10.1007/s10549-006-9293-x
[22]
Inoue Y, Aizaki H, Hara H, Matsuda M, Ando T, Shimoji T, 2011.Chaperonin TRiC/CCT participates in replication of hepatitis C virus genome via interaction with the viral NS5B protein. Virology.410(1):38-47. http://doi.org/10.1016/j.virol.2010.10.026
[23]
Yokota S, Yamamoto Y, Shimizu K, Momoi H, Kamikawa T, Yamaoka Y, 2001.Increased expression of cytosolic chaperonin CCT in human hepatocellular and colonic carcinoma. Cell stress & chaperones.6(4):345-50. http://doi.org/10.1379/1466-1268(2001)006<0345:ieoccc>2.0.co;2
[24]
Aran D, Sirota M, Butte AJ. 2015.Systematic pan-cancer analysis of tumour purity. Nature communications.6:8971. http://doi.org/10.1038/ncomms9971

Recommendations

Comments

Information & Contributors

Information

Published In

cover image ACM Other conferences
ICBBT '21: Proceedings of the 2021 13th International Conference on Bioinformatics and Biomedical Technology
May 2021
293 pages
ISBN:9781450389655
DOI:10.1145/3473258
Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

Publisher

Association for Computing Machinery

New York, NY, United States

Publication History

Published: 11 December 2021

Permissions

Request permissions for this article.

Check for updates

Author Tags

  1. CCT5
  2. LIHC
  3. prognosis
  4. tumor invasion

Qualifiers

  • Research-article
  • Research
  • Refereed limited

Conference

ICBBT '21

Contributors

Other Metrics

Bibliometrics & Citations

Bibliometrics

Article Metrics

  • 0
    Total Citations
  • 21
    Total Downloads
  • Downloads (Last 12 months)12
  • Downloads (Last 6 weeks)0
Reflects downloads up to 16 Oct 2024

Other Metrics

Citations

View Options

Get Access

Login options

View options

PDF

View or Download as a PDF file.

PDF

eReader

View online with eReader.

eReader

HTML Format

View this article in HTML Format.

HTML Format

Media

Figures

Other

Tables

Share

Share

Share this Publication link

Share on social media